PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g011440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 311aa    MW: 34984 Da    PI: 5.952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g011440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.3e-2194195199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                     f+k+l++sdv++++r++lpkk ae+h   ++ +e++ l+++d++g  +W++k++y  +++s++yvl+ ++ +Fv+a+gL+ gDf++ +  ++ ++
  Csa09g011440.1  94 FQKELKNSDVSSLRRMILPKKAAEAHlpALECKEGIPLRMKDLDGrHVWTFKYRYwpNNNSRMYVLE-NTGDFVNAHGLQLGDFIMVY--QNlDS 185
                     99**************************777778899********789*******89999999***9.*******************9..77788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      ++v++++++
  Csa09g011440.1 186 NNYVIQARKA 195
                     8889888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-2990199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-2292194IPR015300DNA-binding pseudobarrel domain
CDDcd100177.58E-2892194No hitNo description
PROSITE profilePS5086310.09594196IPR003340B3 DNA binding domain
PfamPF023621.3E-1794195IPR003340B3 DNA binding domain
SMARTSM010196.1E-2394196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMANENVETK ASPLMASVDH HHRLGSGSGH DHHQGLSASV PLLGVNSKKR RMPRQRRSSS  60
SFKLLSFPPL MPLSSHVPTP LPARIDPGKL RFLFQKELKN SDVSSLRRMI LPKKAAEAHL  120
PALECKEGIP LRMKDLDGRH VWTFKYRYWP NNNSRMYVLE NTGDFVNAHG LQLGDFIMVY  180
QNLDSNNYVI QARKASEEEG EEDVTMVEED DVYTNLTKIE NTVVNDLLIQ DFNHQSSNSN  240
NNKSSYYYPV IDDITTNTAS FVYDTTALTS NDTPLDYLGG STTTTNNYYS DFGSFEGLGS  300
VENISLDDFY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304970.0AJ630497.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g26790.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425402.10.0PREDICTED: B3 domain-containing transcription factor FUS3-like
SwissprotQ9LW311e-180FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLD7LR961e-180D7LR96_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__447__AT3G26790.11e-180(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71382638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-150B3 family protein