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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g011440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 311aa MW: 34984 Da PI: 5.952 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.1 | 5.3e-21 | 94 | 195 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f+k+l++sdv++++r++lpkk ae+h ++ +e++ l+++d++g +W++k++y +++s++yvl+ ++ +Fv+a+gL+ gDf++ + ++ ++ Csa09g011440.1 94 FQKELKNSDVSSLRRMILPKKAAEAHlpALECKEGIPLRMKDLDGrHVWTFKYRYwpNNNSRMYVLE-NTGDFVNAHGLQLGDFIMVY--QNlDS 185 99**************************777778899********789*******89999999***9.*******************9..77788 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++v++++++ Csa09g011440.1 186 NNYVIQARKA 195 8889888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-29 | 90 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-22 | 92 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.58E-28 | 92 | 194 | No hit | No description |
PROSITE profile | PS50863 | 10.095 | 94 | 196 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-17 | 94 | 195 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-23 | 94 | 196 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MMANENVETK ASPLMASVDH HHRLGSGSGH DHHQGLSASV PLLGVNSKKR RMPRQRRSSS 60 SFKLLSFPPL MPLSSHVPTP LPARIDPGKL RFLFQKELKN SDVSSLRRMI LPKKAAEAHL 120 PALECKEGIP LRMKDLDGRH VWTFKYRYWP NNNSRMYVLE NTGDFVNAHG LQLGDFIMVY 180 QNLDSNNYVI QARKASEEEG EEDVTMVEED DVYTNLTKIE NTVVNDLLIQ DFNHQSSNSN 240 NNKSSYYYPV IDDITTNTAS FVYDTTALTS NDTPLDYLGG STTTTNNYYS DFGSFEGLGS 300 VENISLDDFY * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630497 | 0.0 | AJ630497.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g26790. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010425402.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor FUS3-like | ||||
Swissprot | Q9LW31 | 1e-180 | FUS3_ARATH; B3 domain-containing transcription factor FUS3 | ||||
TrEMBL | D7LR96 | 1e-180 | D7LR96_ARALL; Putative uncharacterized protein | ||||
STRING | fgenesh2_kg.5__447__AT3G26790.1 | 1e-180 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7138 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 1e-150 | B3 family protein |